Cite
Koren N, Walenz BP, Rhie A, Vollger M, Grothe R, Logsdon GA, Eichler EE, Phillippy AM, Koren S. HiCanu: precise assembly of segmental duplications and haplotypes using high-fidelity long reads. Biorxiv. (2020).


D. melanogaster
Raw data from NCB for HiFi, CLR, A4 short-read, and ISO1 short-read

D. mel HiFi 40x subset
D. mel CLR 200x subset
D. mel Canu CLR combined assembly and primary and alts
D mel TrioCanu CLR A4 assembly
D. mel TrioCanu CLR ISO1 assembly
D. mel Peregrine HiFi combined assembly and primary and alts
D. mel Canu HiFi combined assembly and primary and alts
D. mel HiCanu HiFi combined assembly and primary and alts


H. sapiens
CHM13
Raw data for 10kb HiFi, 20kb HiFi, Nanopore, and Illumina GIAB

We identified 11 BACs we believe are incorrectly reconstructed or do not match the HiFi-sequenced cell line. Their IDs are: AC278245.1, AC278709.1, AC278859.1, AC278792.1, AC278658.1, AC278258.1, AC278368.1, AC279108.1, AC278968.1, AC278708.1, AC278985.1. We are working to validate/update the BAC library. In the meantime we have provided the corrected set of BACs (original + 11 above corrected based on our HiCanu assembly) here.

Peregrine 10kb HiFi assembly
HiCanu 10kb HiFi assembly

Canu 20kb HiFi assembly
Peregrine 20kb HiFi assembly
HiCanu 20kb HiFi assembly

Canu ONT UL assembly


HG002
Raw data for HiFi, Nanopore, and Illumina GIAB

Peregrine HiFi assembly and primary and alts
Canu HiFi assembly and primary and alts
HiCanu HiFi assembly and primary and alts

Canu ONT UL assembly and primary and alts

HG0733
Raw data for HiFi, Nanopore, and Illumina 1000 genome

Canu HiFi assembly and primary and alts
Peregrine HiFi assembly and primary and alts
HiCanu HiFi assembly and primary and alts

Canu ONT UL assembly and primary and alts